■2004年度 研究業績一覧

ゲノム多様性解析

  1. Hui J, Oka A, Tomizawa M, Tay GK, Kulski JK, Penhale WJ, Isachi SPA, Tamiya G, Inoko H: Identification of two new C4 alleles by DNA sequencing and evidence for a historical recombination of serologically defined C4A and C4B alleles. Tissue Antigens 63: 263-269, 2004.
  2. Li S, Kawata H, Katsuyama Y, Ota M, Morishima Y, Mano S, Kulski JK, Naruse T, Inoko H: Association of polymorphic MHC microsatellites with GVHD, survival, and leukemia relapse in unrelated hematopoietic stem cell transplant donor/recipient pairs matched at five HLA loci. Tissue Antigens 63: 362-368, 2004.
  3. Koishi S, Yamazaki K, Yamamoto K, Koishi S, Enseki Y, Nakamura Y, Oya A, Yasueda M, Asakura A, Aoki Y, Atsumi M, Inomata J, Inoko H, Matsumoto H: Notch4 gene polymorphisms are not associated with autism in Japanese population. Am J Med Genet 125B: 61-62, 2004.
  4. Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk T, Nishikawa A, Hirakawa M, Thierry-Mieg J, Thierry-Mieg D, AshurstJ, Jia J, Nakao M, Thomas MA, Mulder N, Karavidopoulou Y, Jin L, Kim S, Yasuda T, Lenhard B, Eveno E, Suzuki Y, Yamasaki C, Takeda J, Gough C, Hilton P, Fujii Y, Sakai H, Tanaka S, Amid C, Bellgard M, Bonaldo MF, Bono H, Bromberg SK, Brookes AJ, Bruford E, Carninci P, Chelala C, Couillault C, Souza SJ, Debily MA, DevignesMD, Dubchak I, Endo T, Estreicher A, Eyras E, Fukami-Kobayashi K, Gopinath GR, Graudens E, Hahn Y, Han M, Han Z, Hanada K, Hanaoka H, Harada E, Hashimoto K, Hinz U, Hirai M, Hishiki T, Hopkinson I, Imbeaud S, Inoko H, Kanapin A, Kaneko Y, Kasukawa T, Kelso J, Kersey P, Kikuno R, Kimura K, Korn B, KuryshevV, Makalowska I, Makino T, Mano S, Mariage-Samson R, Mashima J, Matsuda H, Mewes H, Minoshima S, Nagai K, Nagasaki H, Nagata N, Nigam R, Ogasawara O, Ohara O, Ohtsubo M, Okada N, Okido T, Oota S, Ota M, Ota T, Otsuki T, Piatier-Tonneau D, Poustka A, Ren S, Saitou N, Sakai K, Sakamoto S, Sakate R, Schupp I, Servant F, Sherry S, Shiba R, Shimizu N, Shimoyama M, Simpson AJ, Soares B, Steward C, Suwa M, Suzuki M, Takahashi A, Tamiya G, Tanaka H, Taylor T, Terwilliger JD, Unneberg P, Veeramachaneni P, Watanabe S, Wilming L, Yasuda N, Yoo H, Stodolsky M, Makalowski W, Go M, Nakai K, Takagi T, Kanehisa M, Sakaki Y, Quackenbush J, Okazak Y, Hayashizaki Y, Hide W, Chakraborty R, Nishikawa K, Sugawara H, Tateno Y, Chen Z, Oishi M, Tonellato P, Apweiler R, Okubo K, Wagner L, Wiemann S, Strausberg RL, Isogai T, Auffray C, Nomura N, Gojobori T, Sugano S: Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones. PLoS Biology 2: 1-20, 2004.
  5. Mano S, Yasuda N, Katoh T, Tounai K, Inoko H, Imanishi T, Tamiya G, Gojobori T: Notes on the maximum likelihood estimation of haplotype frequencies. Annals of Human Genetics 68: 257–264, 2004.
  6. Niizeki H, Matsunaga T, Iwata T, Shimizu T, Kurimoto I, Naruse T, Inoko H, Streilein JW: The MICA5.1 allele is not associated with susceptibility to effects of ultraviolet-B radiation on induction of contact hypersensitivity. J Dermatol Sci 35: 221-223, 2004.
  7. Matsuzaka Y, Okamoto K, Yoshikawa Y, Takaki A, Oka A, Mabuchi T, Iizuka M, Ozawa A, Tamiya G, Kulski JK, Inoko H. hRDH-E2 gene polymorphisms, variable transcriptional start sites, and psoriasis. Mamm Genome 15: 668-675, 2004.
  8. Romphruk AV, Romphruk A, Choonhakarn C, Puapairoj C, Inoko H, Leelayuwat C. Major histocompatibility complex class I chain-related gene A in Thai psoriasis patients: MICA association as a part of human leukocyte antigen-B-Cw haplotypes. Tissue Antigens 63: 547-554, 2004.
  9. Farjadian S, Naruse T, Kawata H, Ghaderi A, Bahram S, Inoko H: Molecular analysis of HLA allele frequencies and haplotypes in Baloch of Iran compared with related populations of Pakistan. Tissue Antigens 64: 581-577, 2004.
  10. Yasuoka H, Okazaki Y, Kawakami Y, Hirakata M, Inoko H, Ikeda Y, Kuwana M: Autoreactive CD8+ cytotoxic T lymphocytes to major histocompatibility complex class I chain-related gene A in patients with Behcet's disease. Arthritis & Rheumamtisms 50: 3658-3662, 2004.
  11. Shiina T, Inoko H, Kulski JK: An update of the HLA genomic region, locus information and disease associations: 2004. Tissue Antigens 64: 631-649, 2004.
  12. Matsumoto T, Yukawa W, Nozaki Y, Nakashige R, Shinya M, Makino S, Yagura M, Ikuta T, Imanishi T, Inoko H, Tamiya G, Gojobori T: Novel algorithm for automated genotyping of microsatellites. Nucleic Acids Res 32: 6069-6077, 2004.
  13. Gourraud PA, Mano S, Barnetche T, Carrington M, Inoko H, Cambon-Thomsen A: Integration of microsatellite characteristics in the MHC region: a literature and sequence based analysis. Tissue Antigens 64: 543-555, 2004.

比較ゲノム学

  1. Shigenari A, Ando A, Renard C, Chardon P, Shiina T, Kulski JK, Yasue H, Inoko H: Nucleotide sequencing analysis of the swine 433-kb genomic segment located between the non-classical and classical SLA class I gene clusters. Immunogenetic 55: 695–705, 2004.
  2. Hurt P, Walter L, Sudbrak R, Klages S, Müller I, Shiina T, Inoko H, Lehrach H, Günther W, Reinhardt R, Himmelbauer H: The genomic sequence and comparative analysis of the rat major histocompatibility complex. Genome Research 4: 631-639, 2004.
  3. Shiina T, Shimizu S, Hosomichi K, Kohara S, Watanebe S, Hanzawa K, Beck S, Kulski JK, Inoko H: Comparative genome analysis of two avian (Quail and Chicken) MHC regions. J Immunol 172: 6751-6763, 2004.
  4. Ohtsuka M, Kikuchi N, Ozato K, Inoko H, Kimura M: Comparative analysis of a 229 kb medaka genomic region, containing that zic1 and zic4 genes, with Fugu, and mouse. Genomics 83: 1063-1071, 2004.
  5. Ohtsuka M, Horiuchi, Kulski JK, Kimura M, Inoko H: CHOP: Visualization of ‘wobbling’ and isolation of highly conserved regions from aligned DNA sequences. Nucleic Acids Research 32: W53-W58, 2004.
  6. Shimizu S, Shiina T, Hosomichi K, Takahashi S, Koyama T, Onodera T, Kulski JK, Inoko H: MHC class IIB gene sequences and expression in quails (Coturnix japonica) selected for high and low antibody responses. Immunogenetics 56: 280-291, 2004.
  7. Ohtsuka M, Kikuchi N, Yokoi H, Kinoshita M, Wakamatsu Y, Ozato K, Takeda H, Inoko H, Kimura M: Possible roles of zic1 and zic4, identified within the medaka Double anal fin (Da) locus, in dorsoventral patterning of the trunk-tail region (related to phenotypes of the Da mutant). Mech Dev 121: 873-882, 2004.
  8. Kulski JK, Anzai T, Shiina T, Inoko H: Rhesus Macaque Class I Duplicon Structures, Organization and Evolution within the Alpha Block of the Major Histocompatibility Complex. Mol Biol Evol 11: 2079-2091, 2004.
  9. International Chicken Genome Sequencing Consortium (Hillier LW, Fulton LA, Mardis ER, Wilson RK, Inoko H, Shiina T et al.): Sequence and comaprative anaysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716, 2004.

その他

  1. Ohtsuka M, Kikuchi N, Nogami M, Inoko H, Ozato K, Kimura M: Rapid screening of a novel arrayed medaka (Oryzias latipes) cosmid library. Mar Biotechnol (NY) 4: 173-178, 2004.